the 3D genome

Why the 3D genome?

The 3D genome plays an important role in cell regulation and programming
The 3D genome plays an important role in cell programming but has been less studied

While the human genome has been fully sequenced, the organization of the genome remains less studied and yet plays a key role in cellular programming and function. Thus, although all cells theoretically have a full set of “genomic blueprints” (a full genome) to carry out cellular functions, the organization and structure of the genome (not just its linear sequence) within each cell has impact on the regulation of those cellular programs and their dysfunction when things go awry.

Chromatin folding patterns can reveal key insights

In fact, only 2% of the genome carries protein-coding DNA; the other 98% includes critical regulatory regions such as enhancers and promoters. Thus, the dynamic folding and unfolding of sections of chromatin (especially those containing regulatory elements) within each cell is critical to its ability to regulate cell division, gene expression, and regulatory pathways.

Genome Composition
only 2 percent of the genome contains coding genes
The challenge of directly studying the 3D genome

There is less known about the 3D genome because, until now, it has been very challenging to directly investigate chromatin and chromosomes within the extremely confined space of a cell nucleus. Now, jebFISH™ Analysis on the PaintScape™ System enables groundbreaking direct visualization of the 3D genome, in situ, in single cells.

Its structure matters—there’s hierarchical organization to the genome

It takes 1.8m of DNA to hold a full human genome, and all that DNA gets packed into a tiny cell nucleus of about 5–8 µm in diameter. In order to fit all that DNA, there is important order and structure to how it is packed and also in how the resulting chromatin architecture and chromosomes are positioned and folded.

structure of the 3D genome matters - the hierarchical organization of the 3D genome

The breakthrough ability to investigate genome organization with the jebFISH-powered PaintScape spatial 3D genome analysis platform opens up a new scientific frontier and will reveal novel insights and discovery in genome biology for health and disease.

jebFISH chromosome traces
The 2m of DNA in every nucleus is not just a set of linear sequences
schematic of jebFISH chromosome traces
How it is folded and organized is critical to cell programming and regulation
jebFISH
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